Lattice Boltzmann approach for complex nonequilibrium flows

We present a lattice Boltzmann realization of Grad's extended hydrodynamic approach to nonequilibrium flows. This is achieved by using higher-order isotropic lattices coupled with a higher-order regularization procedure. The method is assessed for flow across parallel plates and three-dimensional flows in porous media, showing excellent agreement of the mass flow with analytical and numerical solutions of the Boltzmann equation across the full range of Knudsen numbers, from the hydrodynamic regime to ballistic motion.

Short-Lived Lattice Quasiparticles for Strongly Interacting Fluids

It is shown that lattice kinetic theory based on short-lived quasiparticles proves very effective in simulating the complex dynamics of strongly interacting fluids (SIF). In particular, it is pointed out that the shear viscosity of lattice fluids is the sum of two contributions, one due to the usual interactions between particles (collision viscosity) and the other due to the interaction with the discrete lattice (propagation viscosity).

Modeling fluid flows in distensible tubes for applications in hemodynamics

We present a lattice Boltzmann (LB) model for the simulation of hemodynamic flows in the presence of compliant walls. The new scheme is based on the use of a continuous bounce-back boundary condition, as combined with a dynamic constitutive relation between the flow pressure at the wall and the resulting wall deformation. The method is demonstrated for the case of two-dimensional (axisymmetric) pulsatile flows, showing clear evidence of elastic wave propagation of the wall perturbation in response to the fluid pressure.

A hierarchical Krylov--Bayes iterative inverse solver for MEG with physiological preconditioning

The inverse problem of MEG aims at estimating electromagnetic cerebral activity from measurements of the magnetic fields outside the head. After formulating the problem within the Bayesian framework, a hierarchical conditionally Gaussian prior model is introduced, including a physiologically inspired prior model that takes into account the preferred directions of the source currents. The hyperparameter vector consists of prior variances of the dipole moments, assumed to follow a non-conjugate gamma distribution with variable scaling and shape parameters.

Immersed Boundary - Thermal Lattice Boltzmann Methods for Non-Newtonian Flows Over a Heated Cylinder: A Comparative Study

In this study, we compare different diffuse and sharp interface schemes of direct-forcing immersed boundary - thermal lattice Boltzmann method (IB-TLBM) for non-Newtonian flow over a heated circular cylinder. Both effects of the discrete lattice and the body force on the momentum and energy equations are considered, by applying the split-forcing Lattice Boltzmann equations. A new technique based on predetermined parameters of direct forcing IB-TLBM is presented for computing the Nusselt number.

Dynamics of extended bodies in a Kerr spacetime with spin-induced quadrupole tensor

The features of equatorial motion of an extended body in Kerr spacetime are investigated in the framework of the Mathisson-Papapetrou-Dixon model. The body is assumed to stay at quasiequilibrium and respond instantly to external perturbations. Besides the mass, it is completely determined by its spin, the multipolar expansion being truncated at the quadrupole order, with a spin-induced quadrupole tensor. The study of the radial effective potential allows us to analytically determine the innermost stable circular orbit shift due to spin and the associated frequency of the last circular orbit.

Is this the right normalization? A diagnostic tool for ChIP-seq normalization

Background: Chip-seq experiments are becoming a standard approach for genome-wide profiling protein-DNA interactions, such as detecting transcription factor binding sites, histone modification marks and RNA Polymerase II occupancy. However, when comparing a ChIP sample versus a control sample, such as Input DNA, normalization procedures have to be applied in order to remove experimental source of biases. Despite the substantial impact that the choice of the normalization method can have on the results of a ChIP-seq data analysis, their assessment is not fully explored in the literature.