TOM: a web-based integrated approach for identification of candidate disease genes
The massive production of biological data by means of highly parallel devices like microarrays for gene expression has paved the way to new possible approaches in molecular genetics. Among them the possibility of inferring biological answers by querying large amounts of expression data. Based on this principle, we present here TOM, a web-based resource for the efficient extraction of candidate genes for hereditary diseases. The service requires the previous knowledge of at least another gene responsible for the disease and the linkage area, or else of two disease associated genetic intervals.
AMG Preconditioners based on Parallel Hybrid Coarsening and Multi-objective Graph Matching
We describe preliminary results from a multiobjective
graph matching algorithm, in the coarsening step of an
aggregation-based Algebraic MultiGrid (AMG) preconditioner,
for solving large and sparse linear systems of equations on highend
parallel computers. We have two objectives. First, we wish
to improve the convergence behavior of the AMG method when
applied to highly anisotropic problems. Second, we wish to extend
the parallel package PSCToolkit to exploit multi-threaded
parallelism at the node level on multi-core processors.
PRISMA L1 and L2 Performances within the PRISCAV Project: The Pignola Test Site in Southern Italy
In March 2019, the PRISMA (PRecursore IperSpettrale della Missione Applicativa) hyper-spectral satellite was launched by the Italian Space Agency (ASI), and it is currently operational on a global basis. The mission includes the hyperspectral imager PRISMA working in the 400-2500 nm spectral range with 237 bands and a panchromatic (PAN) camera (400-750 nm). This paper presents an evaluation of the PRISMA top-of-atmosphere (TOA) L1 products using different in situ measurements acquired over a fragmented rural area in Southern Italy (Pignola) between October 2019 and July 2021.
Enhanced pClustering and its applications to gene expression data
Clustering has been one of the most popular methods to discover useful biological insights from DNA microarray. An interesting paradigm is simultaneous clustering of both genes and experiments. This "biclustering "paradigm aims at discovering clusters that consist of a subset of the genes showing a coherent expression pattern over a subset of conditions. The pClustering approach is a technique that belongs to this paradigm. Despite many theoretical advantages, this technique has been rarely applied to actual gene expression data analysis.
A non standard finite difference model for a class of renewal equations in epidemiology
Mathematical models based on non-linear integral and integro-differential equations are gaining
increasing attention in mathematical epidemiology due to their ability to incorporate the past
infection dynamic into its current development. This property is particularly suitable to represent
the evolution of diseases where the dependence of infectivity on the time since becoming
infected plays a crucial role.